SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
AAACCCCCGGGGCTCCCCCCGGTTCCTT
1._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
2._EET_272_[ECU]
AAACCCCC____CCCCGG_CC_
3._EET_272_[ECU]
AAACCCCC____CCCCGG_CC_
4._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
9._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
10._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
11._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
12._RUQ_6
__CTAA__TT_CT__TTTT_
13._EET_272_[ECU]
AAAACTAA____CT_AG_CT_
14._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
15._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
16._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
17._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
18._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
19._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
20._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
21._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
22._RUQ_6
______TT_______
23._GC-03-32-3-11
AAAC_CCGGGG_GGGG_GGAAGGAA
24._RUQ_6
AAAA_AAGGGG_GGAG_GGAAAGAA
25._MITC-000381
AAAA_AAGGGG_GGAG_GGAAAGAA
 1516171819202122232425262728
_Input profile
AACCAGCGCCCCTTAATTGGATAACCGG
1._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
2._EET_272_[ECU]
__AG__CC____ATAA_GG
3._EET_272_[ECU]
__AG__CC____ATAA_GG
4._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
9._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
10._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
11._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
12._RUQ_6
____CC____GG_AACCCC
13._EET_272_[ECU]
_____GG________
14._EET_272_[ECU]
__GG__GG____TTAA_CC
15._EET_272_[ECU]
__GG__GG____TTAA_CC
16._EET_272_[ECU]
__GG__GG____TTAA_CC
17._EET_272_[ECU]
__GG__GG____TTAA_CC
18._EET_272_[ECU]
__GG__GG____TTAA_CC
19._EET_272_[ECU]
__GG__GG____TTAA_CC
20._EET_272_[ECU]
__GG__GG____TTAA_CC
21._EET_272_[ECU]
__GG__GG____TTAA_CC
22._RUQ_6
__GGTT_________CC
23._GC-03-32-3-11
TTCCAGCG_CCAAAGAAGGATAAGGCC
24._RUQ_6
TTAAGGCC_GGAGAAAAGGTTAAGGGG
25._MITC-000381
TTAAGGCC_GGAGAAAAGGTTAAGGGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTGGCTAGCC
1._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
2._EET_272_[ECU]
AA___CG_AGGG__GG___
3._EET_272_[ECU]
AA___CG_AGGG__GG___
4._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
9._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
10._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
11._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
12._RUQ_6
___GGGGCCAGGG__AACC__
13._EET_272_[ECU]
AA_____AG___AA___
14._EET_272_[ECU]
AA___GG_AGGG__AA___
15._EET_272_[ECU]
AA___GG_AGGG__AA___
16._EET_272_[ECU]
AA___GG_AGGG__AA___
17._EET_272_[ECU]
AA___GG_AGGG__AA___
18._EET_272_[ECU]
AA___GG_AGGG__AA___
19._EET_272_[ECU]
AA___GG_AGGG__AA___
20._EET_272_[ECU]
AA___GG_AGGG__AA___
21._EET_272_[ECU]
AA___GG_AGGG__AA___
22._RUQ_6
____GG_AG____CC__
23._GC-03-32-3-11
AAAAACGGCGCCAGCCCCAAGGAGAGGG
24._RUQ_6
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._MITC-000381
AAAACCGGGGCCAGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGAAGGTTCCCT
1._GC-03-032-3-11
GGTTCTAAGGAACC_GGAAGGTTCCCT
2._EET_272_[ECU]
__CT_________CCCT
3._EET_272_[ECU]
__CT_________CCCT
4._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
8._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
9._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
10._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
11._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGG_CTCC
12._RUQ_6
GGTT__AG______TTCT_
13._EET_272_[ECU]
____________CTCT
14._EET_272_[ECU]
__TT_________CTCC
15._EET_272_[ECU]
__TT_________CTCC
16._EET_272_[ECU]
__TT_________CTCC
17._EET_272_[ECU]
__TT_________CTCC
18._EET_272_[ECU]
__TT_________CTCC
19._EET_272_[ECU]
__TT_________CTCC
20._EET_272_[ECU]
__TT_________CTCC
21._EET_272_[ECU]
__TT_________CTCC
22._RUQ_6
____AG_________
23._GC-03-32-3-11
CC_AG_GGAAGG_GGAACCAAGGAG
24._RUQ_6
CC_AA_AGAAGG_GGGGCCAAAGGG
25._MITC-000381
CC_AA_AGAAGG_GGGGCCAAAGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
1._GC-03-032-3-11
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
2._EET_272_[ECU]
__CC_CCGG_CCAGGTGG___
3._EET_272_[ECU]
__CC_CCGG_CCAGGTGG___
4._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
5._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
6._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
7._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
8._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
9._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
10._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
11._GC-03-032-3-11
TTGGCCCCTTGGGGACAAGTGGGGTTCG
12._RUQ_6
TT-CCCCTT_GGACAAGTGGGG__
13._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
14._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
15._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
16._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
17._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
18._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
19._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
20._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
21._EET_272_[ECU]
__CC_TTGG_ACAAGTGG___
22._RUQ_6
_GG_____ACAA_GGGG__
23._GC-03-32-3-11
AAGGGGGGGGGGGGCCAGACCCAG__
24._RUQ_6
AAGGGGGGAAGGGGACAAACCCGG__
25._MITC-000381
AAGGGGGGAAGGGGACAAACCCGG__
 7172737475767778798081828384
_Input profile
AGCTCCAGACCCAAACGGCCTTAATTCT
1._GC-03-032-3-11
AGCTCCAGACCCAAACGGCCTTAATTCT
2._EET_272_[ECU]
AGCT_____ACGG___TTCT
3._EET_272_[ECU]
AGCT_____ACGG___TTCT
4._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
5._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
6._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
7._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
8._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
9._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
10._GC-03-032-3-11
AACTACAACCCCAACCCCCCAAACCTCT
11._GC-03-032-3-11
AACTAC_CCCCAACCCCCCAAACCTCT
12._RUQ_6
_______CCCC__ACCT_
13._EET_272_[ECU]
AACT__________CTCT
14._EET_272_[ECU]
AACT_____CCCC___CTCT
15._EET_272_[ECU]
AACT_____CCCC___CTCT
16._EET_272_[ECU]
AACT_____CCCC___CTCT
17._EET_272_[ECU]
AACT_____CCCC___CTCT
18._EET_272_[ECU]
AACT_____CCCC___CTCT
19._EET_272_[ECU]
AACT_____CCCC___CTCT
20._EET_272_[ECU]
AACT_____CCCC___CTCT
21._EET_272_[ECU]
AACT_____CCCC___CTCT
22._RUQ_6
AA______ACCC__AC__
23._GC-03-32-3-11
_AGCCAGACCC_ACCCGGTTAAAAAG
24._RUQ_6
_AGACAACCCC_CCGGGGAAACAGAG
25._MITC-000381
_AGACAACCCC_CCGGGGAAACAGAG
 858687888990919293     
_Input profile
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-03-032-3-11
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
2._EET_272_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
3._EET_272_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
4._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
5._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
6._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
7._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
8._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
9._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
10._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
11._GC-03-032-3-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
12._RUQ_6
__AA-CTTT___X_XX_XX_XX_XX_X
13._EET_272_[ECU]
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
14._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
15._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
16._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
17._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
18._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
19._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
20._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
21._EET_272_[ECU]
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
22._RUQ_6
CC__CT_TT___X_XX_XX_XX_XX_X
23._GC-03-32-3-11
_AA__GGAAAATTGGX_XX_XX_XX_XX_X
24._RUQ_6
_AA__AGAAAAATGGX_XX_XX_XX_XX_X
25._MITC-000381
_AA__AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_272_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._EET_272_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

4._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

72.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._EET_272_[ECU] RUQ_6

67.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EET_272_[ECU]

65.5 %
29 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

14._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

17._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

18._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

19._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

20._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

21._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

22._EET_272_[ECU] RUQ_6

57.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._EET_272_[ECU] GC-03-32-3-11

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._EET_272_[ECU] RUQ_6

35.4 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._EET_272_[ECU] MITC-000381

35.4 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240